PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G06080.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YC
Protein Properties Length: 249aa    MW: 28192.7 Da    PI: 4.4988
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G06080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC152.86.3e-48781811101
            NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 
                      ql++fw++q   +e++t+fk  +lPlarikki+kadedvkmi+ eaP+l++kace+fil++tlrsw h+ee +rrtl++sd++a++++tdifdf
  OMERI08G06080.1  78 QLQAFWADQmaeVEQMTEFKLPNLPLARIKKIMKADEDVKMIAGEAPALFAKACEMFILDMTLRSWQHTEEGRRRTLQRSDVEAVIKKTDIFDF 171
                      89******9777799******************************************************************************* PP

            NF-YC  92 lvdivprdel 101
                      lvdi+  d++
  OMERI08G06080.1 172 LVDIITDDKM 181
                      *****99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.35E-2958172IPR009072Histone-fold
PfamPF008087.0E-19100162IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.108.0E-33101176IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MDPHSHKKAN EGLIGDNPDA YAVTTYQPVL MVEPSAAAAF PPAPQVAPAY PVNPMQLPEH  60
QQHAIQQVQQ LQQQQKEQLQ AFWADQMAEV EQMTEFKLPN LPLARIKKIM KADEDVKMIA  120
GEAPALFAKA CEMFILDMTL RSWQHTEEGR RRTLQRSDVE AVIKKTDIFD FLVDIITDDK  180
MKDDGIGSQA ASMVSPYTSG GMGFSFDLYP NQHHLAYMWP PQEQQEQWPP QEQQEQKQKQ  240
DSDGGGQDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g92_C1e-34691769117HapE
4g91_C1e-34691769117HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150156RRTLQRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2880460.0AB288046.1 Oryza sativa Japonica Group OsHAP5F gene for HAP5 subunit of HAP complex, complete cds.
GenBankAP0038750.0AP003875.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1119_C05.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649458.10.0PREDICTED: nuclear transcription factor Y subunit C-2
RefseqXP_015649457.10.0PREDICTED: nuclear transcription factor Y subunit C-2
TrEMBLA0A0E0EJ480.0A0A0E0EJ48_9ORYZ; Uncharacterized protein
STRINGBGIOSGA027463-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169771112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.24e-51nuclear factor Y, subunit C2